Differences between revisions 1 and 2

R Packages

1. From CRAN

Install these packages from CRAN. Always check the "install dependencies" box.

DPpackage
ggplot2
gsubfn
hexbin
languageR
lme4
MCMCglmm
multcomp
plyr
reshape

2. From Bioconductor

When you install those packages you will get this warning: Warning: dependencies ‘marray’, ‘affy’, ‘Biobase’, ‘Rgraphviz’, ‘’ are not available. To fix it, install the standard packages from [http://www.bioconductor.org/docs/install/ Bioconductor] by doing the following at the R prompt:

source("http://bioconductor.org/biocLite.R")
biocLite(lib='/Library/Frameworks/R.framework/Resources/library/')

adjusting lib as appropriate for your OS. The example above is for Mac OS X.

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