Differences between revisions 3 and 5 (spanning 2 versions)

R Packages

1. From CRAN

Install these packages from CRAN. Always check the "install dependencies" box.

DPpackage
ggplot2
gsubfn
hexbin
languageR
lme4
MCMCglmm
multcomp
plyr
reshape

A quicker way to do it is to copy and paste the following line at your R prompt:

install.packages(c("gsubfn","hexbin","languageR","lme4","MCMCglmm","multcomp","plyr","reshape"))

2. From Bioconductor

When you install those packages you will get this warning: Warning: dependencies ‘marray’, ‘affy’, ‘Biobase’, ‘Rgraphviz’, ‘’ are not available. To fix it, install the standard packages from [http://www.bioconductor.org/docs/install/ Bioconductor] by doing the following at the R prompt:

source("http://bioconductor.org/biocLite.R")
biocLite(lib='/Library/Frameworks/R.framework/Resources/library/')

adjusting lib as appropriate for your OS. The example above is for Mac OS X. For Windows use:

biocLite(lib='C:\\Program Files\\R\\R-2.11.1\\library')

adjusting the version number as appropriate.

-  ⇤ ← Revision 3 as of 2009-08-28 18:53:53 → 
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+   ← Revision 5 as of 2010-07-26 19:00:46 → ⇥
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+A quicker way to do it is to copy and paste the following line at your R prompt:
{{{
install.packages(c("gsubfn","hexbin","languageR","lme4","MCMCglmm","multcomp","plyr","reshape"))
}}}
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+Line 37:
-biocLite(lib='C:\\Program Files\\R\\R-2.9.1\\library')
+biocLite(lib='C:\\Program Files\\R\\R-2.11.1\\library')