• Rpackages

R Packages

1. From CRAN

Install these packages from CRAN. Always check the "install dependencies" box.

• DPpackage
• ggplot2
• gsubfn
• hexbin
• languageR
• lme4
• MCMCglmm
• multcomp
• plyr
• reshape

2. From Bioconductor

When you install those packages you will get this warning: Warning: dependencies ‘marray’, ‘affy’, ‘Biobase’, ‘Rgraphviz’, ‘’ are not available. To fix it, install the standard packages from [http://www.bioconductor.org/docs/install/ Bioconductor] by doing the following at the R prompt:

source("http://bioconductor.org/biocLite.R")
biocLite(lib='/Library/Frameworks/R.framework/Resources/library/')

adjusting lib as appropriate for your OS. The example above is for Mac OS X.